PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004501830.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 472aa    MW: 53043.3 Da    PI: 5.1797
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004501830.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.66.4e-11135157426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     e C+f+++tGtCk+G +CkF+H+
  XP_004501830.1 135 EDCSFYLKTGTCKFGFNCKFNHP 157
                     89********************8 PP

2zf-CCCH314.2e-10181203325
                     S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                     + +C++++r+G Ck+G+ CkF+H
  XP_004501830.1 181 QTECKYYSRSGGCKFGNDCKFNH 203
                     679******************** PP

3zf-CCCH41.42.4e-13227250326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     +++C++++rtG Ck+G++CkF+H+
  XP_004501830.1 227 EKECPYYMRTGSCKFGSSCKFNHP 250
                     689********************9 PP

4zf-CCCH26.21.4e-08361387127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+ff++tG Ck+ + CkF+H++
  XP_004501830.1 361 PGEPECSFFLKTGDCKFKSHCKFHHPK 387
                     5799*********************96 PP

5zf-CCCH34.24.4e-11409432326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     +  C +++r+G+Ck+G+ CkF H+
  XP_004501830.1 409 QNVCTHYSRYGICKFGPACKFDHP 432
                     568********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.79E-6131160IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-4131158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502131159IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8135157IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4137156IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.601178206IPR000571Zinc finger, CCCH-type
SMARTSM003569.4E-5178205IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-7181203IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5182207IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4184205IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-6224251IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.713224252IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6225251IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-11227250IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5230249IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.788360388IPR000571Zinc finger, CCCH-type
SMARTSM003560.0012360387IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-6362387IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-5365389IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6404432IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-4406433IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.727406434IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-8409432IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-4411431IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MEPLEQSESI GSSIKDPQLS SHIQSLDDDY HDPQPPNLNH ITHLDEELQN KLDLKDEDEI  60
EGKSSNFEVR DEHLCDEDAS PESDKGQGFH HDDDDGWIGD DEVSDWIENV SEKVDEVENK  120
DERRHEQYPL RPEAEDCSFY LKTGTCKFGF NCKFNHPIRR RNQAFKEKVG ERDELEERSG  180
QTECKYYSRS GGCKFGNDCK FNHTRGKCSA VPVSELNFLG LPIRLGEKEC PYYMRTGSCK  240
FGSSCKFNHP DPTSVGGYDS TSGYGNGSSI SLQDASQSST PSWSSTRKLN ETTPFVPIII  300
SPSPGASPRS SDWNGYQAPF YLSERSMHPP SSYAVNNPAV ETNVYMHRHK QMPVEEFPER  360
PGEPECSFFL KTGDCKFKSH CKFHHPKSRI ARLPPIILSD KGLPLRPDQN VCTHYSRYGI  420
CKFGPACKFD HPINPPPPPP TMRGHDQQSS YTNSASIEEE AGSGGASDAT IQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004501830.10.0PREDICTED: zinc finger CCCH domain-containing protein 67-like
SwissprotQ9STM41e-136C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLG8A2H70.0G8A2H7_MEDTR; Uncharacterized protein
STRINGGLYMA17G13580.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.11e-122C3H family protein